Digital Expression on the Web
This is the web app or web related tool named Digital Expression on the Web whose latest release can be downloaded as dew_RC2.tar.bz2 from this website redcoolmedia.net
Digital Expression on the Web
APP DESCRIPTION:
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DEW is a platform that allows users to explore RNA-Seq data. A web-based Graphical User Interface is included.The analysis proceeds as such: gapped alignments are performed and corrected for length, PCR and fragment bias so that a Fragment Per (effective) Kilobase per Million of reads (FPKM) is estimated as well as the simpler Reads Per Kb per Million of reads (RPKM). When provided with multiple isoforms and in the ‘contextual’ mode, corrections include a expectation maximization algorithm estimates effective expression profiles and a corrected alignment is produced. For each gene the user provides, DEW computes coverage descriptive statistics (RPKM, FKMP and total, mean and median corrected counts), expression profiles (normalized as R/FPKM and trimmed mean of fold change). DEW allows users to explore the data by providing interactive graphs.
Audience
Science/Research
User interface
Web-based
Programming Language
Perl, JavaScript, S/R
Database Environment
SQLite
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